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HACD4 3-hydroxyacyl-CoA dehydratase 4 [ Microcaecilia unicolor ]

Gene ID: 115463567, updated on 17-Mar-2024

Summary

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Gene symbol
HACD4
Gene description
3-hydroxyacyl-CoA dehydratase 4
Gene type
protein coding
RefSeq status
MODEL
Organism
Microcaecilia unicolor
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Siphonopidae; Microcaecilia
Orthologs
human mouse all
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Genomic context

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See HACD4 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
12
Annotation release Status Assembly Chr Location
100 current aMicUni1.1 (GCF_901765095.1) 2 NC_044032.1 (281799775..281911350, complement)

Chromosome 2 - NC_044032.1Genomic Context describing neighboring genes Neighboring gene MLLT3 super elongation complex subunit Neighboring gene transfer RNA tyrosine (anticodon GUA) Neighboring gene focadhesin Neighboring gene transfer RNA alanine (anticodon UGC) Neighboring gene methylthioadenosine phosphorylase Neighboring gene cyclin-dependent kinase inhibitor 2A-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044032.1 Chromosome 2 Reference aMicUni1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptomes of caecilian amphibians highlight incomplete knowledge of vertebrate gene families. Torres-Sánchez M, et al. DNA Res, 2019 Feb 1. PMID 30351380, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3-hydroxyacyl-CoA dehydratase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fatty acid elongation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in very long-chain fatty acid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Microcaecilia unicolor Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aMicUni1.1 Primary Assembly

Genomic

  1. NC_044032.1 Reference aMicUni1.1 Primary Assembly

    Range
    281799775..281911350 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030194213.1 → XP_030050073.1  very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4 isoform X1

    UniProtKB/TrEMBL
    A0A6P7XC23
    Conserved Domains (1) summary
    pfam04387
    Location:101 → 257
    PTPLA; Protein tyrosine phosphatase-like protein, PTPLA

  2. XM_030194216.1 → XP_030050076.1  very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4 isoform X4

    UniProtKB/TrEMBL
    A0A6P7XC27
    Conserved Domains (1) summary
    pfam04387
    Location:50 → 206
    PTPLA; Protein tyrosine phosphatase-like protein, PTPLA

  3. XM_030194218.1 → XP_030050078.1  very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4 isoform X4

    UniProtKB/TrEMBL
    A0A6P7XC27
    Conserved Domains (1) summary
    pfam04387
    Location:50 → 206
    PTPLA; Protein tyrosine phosphatase-like protein, PTPLA

  4. XM_030194215.1 → XP_030050075.1  very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4 isoform X3

    UniProtKB/TrEMBL
    A0A6P7XHC1
    Conserved Domains (1) summary
    pfam04387
    Location:54 → 210
    PTPLA; Protein tyrosine phosphatase-like protein, PTPLA

  5. XM_030194214.1 → XP_030050074.1  very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 4 isoform X2

    UniProtKB/TrEMBL
    A0A6P7XIG6
    Conserved Domains (1) summary
    pfam04387
    Location:93 → 249
    PTPLA; Protein tyrosine phosphatase-like protein, PTPLA
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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