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HCFC1 host cell factor C1 [ Microcaecilia unicolor ]

Gene ID: 115462014, updated on 17-Mar-2024

Summary

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Gene symbol
HCFC1
Gene description
host cell factor C1
Gene type
protein coding
RefSeq status
MODEL
Organism
Microcaecilia unicolor
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Siphonopidae; Microcaecilia
Orthologs
human mouse all
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Genomic context

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See HCFC1 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
25
Annotation release Status Assembly Chr Location
100 current aMicUni1.1 (GCF_901765095.1) 2 NC_044032.1 (265707065..266202680)

Chromosome 2 - NC_044032.1Genomic Context describing neighboring genes Neighboring gene 28S ribosomal RNA Neighboring gene transmembrane protein 187 Neighboring gene host cell factor 1-like Neighboring gene transfer RNA serine (anticodon AGA)

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044032.1 Chromosome 2 Reference aMicUni1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptomes of caecilian amphibians highlight incomplete knowledge of vertebrate gene families. Torres-Sánchez M, et al. DNA Res, 2019 Feb 1. PMID 30351380, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coactivator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of histone methyltransferase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: host cell factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Microcaecilia unicolor Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aMicUni1.1 Primary Assembly

Genomic

  1. NC_044032.1 Reference aMicUni1.1 Primary Assembly

    Range
    265707065..266202680
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030192062.1 → XP_030047922.1  LOW QUALITY PROTEIN: host cell factor 1

    UniProtKB/TrEMBL
    A0A6P7WXH0
    Conserved Domains (6) summary
    PHA03255
    Location:1046 → 1196
    PHA03255; BDLF3; Provisional
    PLN02193
    Location:15 → 326
    PLN02193; nitrile-specifier protein
    COG1196
    Location:532 → 725
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cd00063
    Location:2128 → 2157
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    sd00038
    Location:204 → 257
    Kelch; KELCH repeat [structural motif]
    pfam13854
    Location:323 → 355
    Kelch_5; Kelch motif
Nucleotide Protein
Heading Accession and Version

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