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LOC115458890 carbohydrate sulfotransferase 5-like [ Microcaecilia unicolor ]

Gene ID: 115458890, updated on 23-Oct-2023

Summary

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Gene symbol
LOC115458890
Gene description
carbohydrate sulfotransferase 5-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Microcaecilia unicolor
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Siphonopidae; Microcaecilia
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Genomic context

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See LOC115458890 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
3
Annotation release Status Assembly Chr Location
100 current aMicUni1.1 (GCF_901765095.1) Unplaced Scaffold NW_021963072.1 (158565..213865)

NW_021963072.1Genomic Context describing neighboring genes Neighboring gene gamma-aminobutyric acid receptor-associated protein-like 2 Neighboring gene transmembrane protein 231-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_021963072 Unplaced Scaffold Reference aMicUni1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptomes of caecilian amphibians highlight incomplete knowledge of vertebrate gene families. Torres-Sánchez M, et al. DNA Res, 2019 Feb 1. PMID 30351380, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetylglucosamine 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acetylglucosamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in keratan sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 5-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Microcaecilia unicolor Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aMicUni1.1 Primary Assembly

Genomic

  1. NW_021963072.1 Reference aMicUni1.1 Primary Assembly

    Range
    158565..213865
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030188729.1 → XP_030044589.1  carbohydrate sulfotransferase 5-like

    UniProtKB/TrEMBL
    A0A6P7X398
    Conserved Domains (1) summary
    pfam13469
    Location:45 → 297
    Sulfotransfer_3; Sulfotransferase family

  2. XM_030188728.1 → XP_030044588.1  carbohydrate sulfotransferase 5-like

    UniProtKB/TrEMBL
    A0A6P7X398
    Conserved Domains (1) summary
    pfam13469
    Location:45 → 297
    Sulfotransfer_3; Sulfotransferase family

  3. XM_030188727.1 → XP_030044587.1  carbohydrate sulfotransferase 5-like

    UniProtKB/TrEMBL
    A0A6P7X398
    Conserved Domains (1) summary
    pfam13469
    Location:45 → 297
    Sulfotransfer_3; Sulfotransferase family
Nucleotide Protein
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