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GDPD1 glycerophosphodiester phosphodiesterase domain containing 1 [ Microcaecilia unicolor ]

Gene ID: 115456534, updated on 17-Mar-2024

Summary

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Gene symbol
GDPD1
Gene description
glycerophosphodiester phosphodiesterase domain containing 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Microcaecilia unicolor
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Gymnophiona; Siphonopidae; Microcaecilia
Orthologs
human mouse all
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Genomic context

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See GDPD1 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
10
Annotation release Status Assembly Chr Location
100 current aMicUni1.1 (GCF_901765095.1) 13 NC_044043.1 (50352873..50390917, complement)

Chromosome 13 - NC_044043.1Genomic Context describing neighboring genes Neighboring gene yippee like 2 Neighboring gene uncharacterized LOC115456789 Neighboring gene SMG8 nonsense mediated mRNA decay factor Neighboring gene proline rich 11

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044043.1 Chromosome 13 Reference aMicUni1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Multi-tissue transcriptomes of caecilian amphibians highlight incomplete knowledge of vertebrate gene families. Torres-Sánchez M, et al. DNA Res, 2019 Feb 1. PMID 30351380, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables lysophospholipase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphoric diester hydrolase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in N-acylethanolamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in glycerophospholipid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysophospholipase D GDPD1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Microcaecilia unicolor Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference aMicUni1.1 Primary Assembly

Genomic

  1. NC_044043.1 Reference aMicUni1.1 Primary Assembly

    Range
    50352873..50390917 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030185677.1 → XP_030041537.1  lysophospholipase D GDPD1 isoform X2

    UniProtKB/TrEMBL
    A0A6P7WEH6
    Conserved Domains (1) summary
    cd08612
    Location:12 → 280
    GDPD_GDE4; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins

  2. XM_030185676.1 → XP_030041536.1  lysophospholipase D GDPD1 isoform X1

    UniProtKB/TrEMBL
    A0A6P7WKM9
    Conserved Domains (1) summary
    cd08612
    Location:12 → 310
    GDPD_GDE4; Glycerophosphodiester phosphodiesterase domain of mammalian glycerophosphodiester phosphodiesterase GDE4 and similar proteins
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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