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LOC115451835 protein C10 [ Manduca sexta (tobacco hornworm) ]

Gene ID: 115451835, updated on 14-Dec-2023

Summary

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Gene symbol
LOC115451835
Gene description
protein C10
Locus tag
O3G_MSEX002300
See related
EnsemblRapid:ENSMSXG00000013472
Gene type
protein coding
RefSeq status
MODEL
Organism
Manduca sexta
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini; Manduca
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Genomic context

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See LOC115451835 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
5
Annotation release Status Assembly Chr Location
102 current JHU_Msex_v1.0 (GCF_014839805.1) 12 NC_051126.1 (13545653..13553769, complement)
100 previous assembly Msex_1.0 (GCF_000262585.1) Unplaced Scaffold NW_021941991.1 (312665..320782)

Chromosome 12 - NC_051126.1Genomic Context describing neighboring genes Neighboring gene probable low-specificity L-threonine aldolase 2 Neighboring gene probable low-specificity L-threonine aldolase 2 Neighboring gene transmembrane channel-like protein 6 Neighboring gene C-type mannose receptor 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Integrated modeling of protein-coding genes in the Manduca sexta genome using RNA-Seq data from the biochemical model insect. Cao X, et al. Insect Biochem Mol Biol, 2015 Jul. PMID 25612938, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in post-embryonic development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,3-galactosyltransferase brn; protein C10

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Manduca sexta Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference JHU_Msex_v1.0 Primary Assembly

Genomic

  1. NC_051126.1 Reference JHU_Msex_v1.0 Primary Assembly

    Range
    13545653..13553769 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030180216.1 → XP_030036076.1  beta-1,3-galactosyltransferase brn isoform X1

    UniProtKB/TrEMBL
    A0A921YN24
    Conserved Domains (1) summary
    cl21608
    Location:99 → 312
    Galactosyl_T; Galactosyltransferase

  2. XM_030180239.2 → XP_030036099.1  protein C10 isoform X2

    UniProtKB/TrEMBL
    A0A922CDK1
    Related
    ENSMSXP00000019234.1, ENSMSXT00000022172.1
    Conserved Domains (1) summary
    pfam14974
    Location:8 → 109
    P_C10; Protein C10

  3. XM_030180249.2 → XP_030036109.1  protein C10 isoform X2

    UniProtKB/TrEMBL
    A0A922CDK1
    Conserved Domains (1) summary
    pfam14974
    Location:8 → 109
    P_C10; Protein C10

  4. XM_030180223.2 → XP_030036083.1  protein C10 isoform X2

    UniProtKB/TrEMBL
    A0A922CDK1
    Conserved Domains (1) summary
    pfam14974
    Location:8 → 109
    P_C10; Protein C10

  5. XM_030180229.2 → XP_030036089.1  protein C10 isoform X2

    UniProtKB/TrEMBL
    A0A922CDK1
    Related
    ENSMSXP00000019242.1, ENSMSXT00000022181.1
    Conserved Domains (1) summary
    pfam14974
    Location:8 → 109
    P_C10; Protein C10
Nucleotide Protein
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