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LOC115451384 zeta-sarcoglycan [ Manduca sexta (tobacco hornworm) ]

Gene ID: 115451384, updated on 14-Dec-2023

Summary

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Gene symbol
LOC115451384
Gene description
zeta-sarcoglycan
Locus tag
O3G_MSEX013013
See related
EnsemblRapid:ENSMSXG00000003320
Gene type
protein coding
RefSeq status
MODEL
Organism
Manduca sexta
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini; Manduca
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Genomic context

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See LOC115451384 in Genome Data Viewer
Location:
chromosome: 22
Exon count:
6
Annotation release Status Assembly Chr Location
102 current JHU_Msex_v1.0 (GCF_014839805.1) 22 NC_051136.1 (9264659..9296559)
100 previous assembly Msex_1.0 (GCF_000262585.1) Unplaced Scaffold NW_021942502.1 (3694..36454, complement)

Chromosome 22 - NC_051136.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119190193 Neighboring gene delta-sarcoglycan-like Neighboring gene uncharacterized LOC119190196 Neighboring gene uncharacterized LOC115453548

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Integrated modeling of protein-coding genes in the Manduca sexta genome using RNA-Seq data from the biochemical model insect. Cao X, et al. Insect Biochem Mol Biol, 2015 Jul. PMID 25612938, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zeta-sarcoglycan

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Manduca sexta Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference JHU_Msex_v1.0 Primary Assembly

Genomic

  1. NC_051136.1 Reference JHU_Msex_v1.0 Primary Assembly

    Range
    9264659..9296559
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030179678.2 → XP_030035538.1  zeta-sarcoglycan

    UniProtKB/TrEMBL
    A0A921ZV06, A0A922CXK9
    Related
    ENSMSXP00000004738.1, ENSMSXT00000005572.1
    Conserved Domains (1) summary
    pfam04790
    Location:65 → 325
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

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