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botv exostosin like glycosyltransferase 3 [ Manduca sexta (tobacco hornworm) ]

Gene ID: 115450427, updated on 23-May-2024

Summary

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Gene symbol
botv
Gene description
exostosin like glycosyltransferase 3
Locus tag
O3G_MSEX012181
See related
EnsemblRapid:ENSMSXG00000003379
Gene type
protein coding
RefSeq status
MODEL
Organism
Manduca sexta
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini; Manduca
Orthologs
fruit fly all
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Genomic context

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See botv in Genome Data Viewer
Location:
chromosome: 28
Exon count:
12
Annotation release Status Assembly Chr Location
102 current JHU_Msex_v1.0 (GCF_014839805.1) 28 NC_051142.1 (8592278..8622658, complement)
100 previous assembly Msex_1.0 (GCF_000262585.1) Unplaced Scaffold NW_021942392.1 (204692..232969)

Chromosome 28 - NC_051142.1Genomic Context describing neighboring genes Neighboring gene RE1-silencing transcription factor Neighboring gene aquaporin Neighboring gene uncharacterized LOC115450426 Neighboring gene uncharacterized LOC115450432 Neighboring gene uncharacterized LOC115450433 Neighboring gene zinc finger CCHC domain-containing protein 24 Neighboring gene uncharacterized LOC115450423

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Integrated modeling of protein-coding genes in the Manduca sexta genome using RNA-Seq data from the biochemical model insect. Cao X, et al. Insect Biochem Mol Biol, 2015 Jul. PMID 25612938, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
exostosin-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Manduca sexta Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference JHU_Msex_v1.0 Primary Assembly

Genomic

  1. NC_051142.1 Reference JHU_Msex_v1.0 Primary Assembly

    Range
    8592278..8622658 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030178442.2 → XP_030034302.1  exostosin-3 isoform X1

    UniProtKB/TrEMBL
    A0A921ZMT0
    Conserved Domains (3) summary
    pfam03016
    Location:447 → 760
    Exostosin; Exostosin family
    pfam08652
    Location:202 → 283
    RAI1; RAI1 like PD-(D/E)XK nuclease
    pfam09258
    Location:922 → 1160
    Glyco_transf_64; Glycosyl transferase family 64 domain

  2. XM_030178443.2 → XP_030034303.1  exostosin-3 isoform X2

    UniProtKB/TrEMBL
    A0A922CWC9
    Related
    ENSMSXP00000004835.1, ENSMSXT00000005679.1
    Conserved Domains (2) summary
    pfam03016
    Location:188 → 501
    Exostosin; Exostosin family
    pfam09258
    Location:663 → 901
    Glyco_transf_64; Glycosyl transferase family 64 domain
Nucleotide Protein
Heading Accession and Version

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