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LOC115449198 beta-1,3-galactosyltransferase 6 [ Manduca sexta (tobacco hornworm) ]

Gene ID: 115449198, updated on 10-May-2024

Summary

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Gene symbol
LOC115449198
Gene description
beta-1,3-galactosyltransferase 6
Locus tag
O3G_MSEX011154
See related
EnsemblRapid:ENSMSXG00000003753
Gene type
protein coding
RefSeq status
MODEL
Organism
Manduca sexta
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini; Manduca
Orthologs
fruit fly all
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Genomic context

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See LOC115449198 in Genome Data Viewer
Location:
chromosome: 28
Exon count:
3
Annotation release Status Assembly Chr Location
102 current JHU_Msex_v1.0 (GCF_014839805.1) 28 NC_051142.1 (8829145..8831462)
100 previous assembly Msex_1.0 (GCF_000262585.1) Unplaced Scaffold NW_021942304.1 (353730..356081, complement)

Chromosome 28 - NC_051142.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115450431 Neighboring gene multidrug resistance-associated protein 4 Neighboring gene UDP-glucuronic acid decarboxylase 1 Neighboring gene glycerophosphodiester phosphodiesterase GDPD6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Integrated modeling of protein-coding genes in the Manduca sexta genome using RNA-Seq data from the biochemical model insect. Cao X, et al. Insect Biochem Mol Biol, 2015 Jul. PMID 25612938, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables UDP-galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycosaminoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
beta-1,3-galactosyltransferase 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Manduca sexta Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference JHU_Msex_v1.0 Primary Assembly

Genomic

  1. NC_051142.1 Reference JHU_Msex_v1.0 Primary Assembly

    Range
    8829145..8831462
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030176929.2 → XP_030032789.2  beta-1,3-galactosyltransferase 6 isoform X1

    UniProtKB/TrEMBL
    A0A922CUW0
    Related
    ENSMSXP00000005411.1, ENSMSXT00000006321.1
    Conserved Domains (1) summary
    cl21608
    Location:67 → 296
    Galactosyl_T; Galactosyltransferase

  2. XM_037444568.1 → XP_037300465.1  beta-1,3-galactosyltransferase 6 isoform X2

    Conserved Domains (1) summary
    PLN03133
    Location:38 → 217
    PLN03133; beta-1,3-galactosyltransferase; Provisional
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases