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LOC115448675 lactosylceramide 4-alpha-galactosyltransferase [ Manduca sexta (tobacco hornworm) ]

Gene ID: 115448675, updated on 14-Dec-2023

Summary

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Gene symbol
LOC115448675
Gene description
lactosylceramide 4-alpha-galactosyltransferase
Gene type
protein coding
RefSeq status
MODEL
Organism
Manduca sexta
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini; Manduca
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Genomic context

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See LOC115448675 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
3
Annotation release Status Assembly Chr Location
102 current JHU_Msex_v1.0 (GCF_014839805.1) 12 NC_051126.1 (2372530..2375035)
100 previous assembly Msex_1.0 (GCF_000262585.1) Unplaced Scaffold NW_021942274.1 (58948..60510)

Chromosome 12 - NC_051126.1Genomic Context describing neighboring genes Neighboring gene deoxynucleoside kinase Neighboring gene NADH-ubiquinone oxidoreductase subunit 8 Neighboring gene pyridoxal-dependent decarboxylase domain-containing protein 1 Neighboring gene zinc finger protein 433 Neighboring gene ribosomal protein S24

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Integrated modeling of protein-coding genes in the Manduca sexta genome using RNA-Seq data from the biochemical model insect. Cao X, et al. Insect Biochem Mol Biol, 2015 Jul. PMID 25612938, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glycosphingolipid biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lactosylceramide 4-alpha-galactosyltransferase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Manduca sexta Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference JHU_Msex_v1.0 Primary Assembly

Genomic

  1. NC_051126.1 Reference JHU_Msex_v1.0 Primary Assembly

    Range
    2372530..2375035
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030176181.2 → XP_030032041.2  lactosylceramide 4-alpha-galactosyltransferase

    Conserved Domains (2) summary
    pfam04572
    Location:230 → 344
    Gb3_synth; Alpha 1,4-glycosyltransferase conserved region
    cl19952
    Location:96 → 202
    Gly_transf_sug; Glycosyltransferase sugar-binding region containing DXD motif
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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