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Chpf Chondroitin polymerizing factor [ Manduca sexta (tobacco hornworm) ]

Gene ID: 115445936, updated on 23-May-2024

Summary

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Gene symbol
Chpf
Gene description
Chondroitin polymerizing factor
Locus tag
O3G_MSEX008411
See related
EnsemblRapid:ENSMSXG00000009768
Gene type
protein coding
RefSeq status
MODEL
Organism
Manduca sexta
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Sphingidae; Sphinginae; Sphingini; Manduca
Orthologs
fruit fly all
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Genomic context

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See Chpf in Genome Data Viewer
Location:
chromosome: 4
Exon count:
6
Annotation release Status Assembly Chr Location
102 current JHU_Msex_v1.0 (GCF_014839805.1) 4 NC_051118.1 (9937818..9942599)
100 previous assembly Msex_1.0 (GCF_000262585.1) Unplaced Scaffold NW_021942152.1 (622801..627541)

Chromosome 4 - NC_051118.1Genomic Context describing neighboring genes Neighboring gene trypsin, alkaline C-like Neighboring gene uncharacterized LOC115445931 Neighboring gene influenza virus NS1A-binding protein homolog Neighboring gene gamma-aminobutyric acid receptor subunit beta

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Integrated modeling of protein-coding genes in the Manduca sexta genome using RNA-Seq data from the biochemical model insect. Cao X, et al. Insect Biochem Mol Biol, 2015 Jul. PMID 25612938, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chondroitin sulfate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi cisterna membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chondroitin sulfate synthase 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Manduca sexta Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference JHU_Msex_v1.0 Primary Assembly

Genomic

  1. NC_051118.1 Reference JHU_Msex_v1.0 Primary Assembly

    Range
    9937818..9942599
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030172451.2 → XP_030028311.2  chondroitin sulfate synthase 2

    UniProtKB/TrEMBL
    A0A921Z9Q3
    Related
    ENSMSXP00000013933.1, ENSMSXT00000016066.1
    Conserved Domains (1) summary
    cl11394
    Location:240 → 711
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
Heading Accession and Version

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