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TPHA0F03340 hypothetical protein [ Tetrapisispora phaffii CBS 4417 ]

Gene ID: 11535479, updated on 26-Jun-2024

Summary

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Gene symbol
TPHA0F03340
Gene description
hypothetical protein
Locus tag
TPHA_0F03340
Gene type
protein coding
RNA name
hypothetical protein
RefSeq status
PROVISIONAL
Organism
Tetrapisispora phaffii CBS 4417 (strain: type strain:CBS 4417)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Tetrapisispora
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Genomic context

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See TPHA0F03340 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
1
Sequence:
Chromosome: 6; NC_016525.1 (719086..720387, complement)

Chromosome 6 - NC_016525.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_016525.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Evolutionary erosion of yeast sex chromosomes by mating-type switching accidents. Gordon JL, et al. Proc Natl Acad Sci U S A, 2011 Dec 13. PMID 22123960, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glycosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in fungal-type cell wall organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in fungal-type cell wall IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein
XP_003686249.1
  • similar to Saccharomyces cerevisiae UTR2 (YEL040W); ancestral locus Anc_1.483

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_016525.1 Reference assembly

    Range
    719086..720387 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003686201.1 → XP_003686249.1  hypothetical protein TPHA_0F03340 [Tetrapisispora phaffii CBS 4417]

    See identical proteins and their annotated locations for XP_003686249.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    G8BUM9
    Conserved Domains (2) summary
    cd02183
    Location:92 → 301
    GH16_fungal_CRH1_transglycosylase; glycosylphosphatidylinositol-glucanosyltransferase
    cl16916
    Location:24 → 70
    ChtBD1; Hevein or type 1 chitin binding domain
Nucleotide Protein
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