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ATRNL1 attractin like 1 [ Aquila chrysaetos chrysaetos ]

Gene ID: 115348239, updated on 3-Aug-2024

Summary

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Gene symbol
ATRNL1
Gene description
attractin like 1
See related
Ensembl:ENSACCG00020008282
Gene type
protein coding
RefSeq status
MODEL
Organism
Aquila chrysaetos chrysaetos (sub-species: chrysaetos)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Accipitrimorphae; Accipitriformes; Accipitridae; Accipitrinae; Aquila
Orthologs
human mouse all
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Genomic context

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See ATRNL1 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
30
Annotation release Status Assembly Chr Location
101 current bAquChr1.4 (GCF_900496995.4) 11 NC_044014.1 (8854888..9394778, complement)

Chromosome 11 - NC_044014.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 172 Neighboring gene GDNF family receptor alpha 1 Neighboring gene TruB pseudouridine synthase family member 1 Neighboring gene FHF complex subunit HOOK interacting protein 2A

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044014.1 Chromosome 11 Reference bAquChr1.4

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
attractin-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Aquila chrysaetos chrysaetos Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bAquChr1.4

Genomic

  1. NC_044014.1 Reference bAquChr1.4

    Range
    8854888..9394778 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030030646.1 → XP_029886506.1  attractin-like protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A663EIN4, A0A663EJI5
    Related
    ENSACCP00020012023.1, ENSACCT00020012571.1
    Conserved Domains (9) summary
    cd03597
    Location:754 → 880
    CLECT_attractin_like; C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP)
    PLN02153
    Location:460 → 606
    PLN02153; epithiospecifier protein
    PLN02193
    Location:306 → 401
    PLN02193; nitrile-specifier protein
    cd00041
    Location:99 → 214
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00055
    Location:1019 → 1064
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    sd00038
    Location:474 → 523
    Kelch; KELCH repeat [structural motif]
    pfam01414
    Location:228 → 286
    DSL; Delta serrate ligand
    pfam01437
    Location:895 → 943
    PSI; Plexin repeat
    pfam13854
    Location:358 → 398
    Kelch_5; Kelch motif

  2. XM_030030645.1 → XP_029886505.1  attractin-like protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A663EI35, A0A663EJI5
    Related
    ENSACCP00020012010.1, ENSACCT00020012558.1
    Conserved Domains (9) summary
    cd03597
    Location:754 → 880
    CLECT_attractin_like; C-type lectin-like domain (CTLD) of the type found in human and mouse attractin (AtrN) and attractin-like protein (ALP)
    PLN02153
    Location:460 → 606
    PLN02153; epithiospecifier protein
    PLN02193
    Location:306 → 401
    PLN02193; nitrile-specifier protein
    cd00041
    Location:99 → 214
    CUB; CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast.
    cd00055
    Location:1019 → 1064
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    sd00038
    Location:474 → 523
    Kelch; KELCH repeat [structural motif]
    pfam01414
    Location:228 → 286
    DSL; Delta serrate ligand
    pfam01437
    Location:895 → 943
    PSI; Plexin repeat
    pfam13854
    Location:358 → 398
    Kelch_5; Kelch motif

  3. XM_030030649.2 → XP_029886509.1  attractin-like protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A663EJI5

  4. XM_030030647.2 → XP_029886507.1  attractin-like protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A663EIB1, A0A663EJI5
    Related
    ENSACCP00020012060.1
Nucleotide Protein
Heading Accession and Version

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