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GPC1 glypican 1 [ Aquila chrysaetos chrysaetos ]

Gene ID: 115347612, updated on 3-Aug-2024

Summary

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Gene symbol
GPC1
Gene description
glypican 1
See related
Ensembl:ENSACCG00020005613
Gene type
protein coding
RefSeq status
MODEL
Organism
Aquila chrysaetos chrysaetos (sub-species: chrysaetos)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Accipitrimorphae; Accipitriformes; Accipitridae; Accipitrinae; Aquila
Orthologs
human mouse all
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Genomic context

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See GPC1 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
11
Annotation release Status Assembly Chr Location
101 current bAquChr1.4 (GCF_900496995.4) 10 NC_044013.1 (25204159..25424940)

Chromosome 10 - NC_044013.1Genomic Context describing neighboring genes Neighboring gene glypican-5-like Neighboring gene otospiralin Neighboring gene uncharacterized LOC115347347 Neighboring gene skin secretory protein xP2-like Neighboring gene claudin-15-like Neighboring gene dual specificity phosphatase 28

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044013.1 Chromosome 10 Reference bAquChr1.4

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables fibroblast growth factor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of fibroblast growth factor receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of protein localization to membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell surface IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in collagen-containing extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synapse IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glypican-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Aquila chrysaetos chrysaetos Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bAquChr1.4

Genomic

  1. NC_044013.1 Reference bAquChr1.4

    Range
    25204159..25424940
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030029161.2 → XP_029885021.1  glypican-1 isoform X1

    UniProtKB/TrEMBL
    A0A663E8H7
    Related
    ENSACCP00020008259.1
    Conserved Domains (1) summary
    pfam01153
    Location:10 → 542
    Glypican

  2. XM_030029162.2 → XP_029885022.1  glypican-1 isoform X2

    Conserved Domains (1) summary
    pfam01153
    Location:1 → 473
    Glypican

RNA

  1. XR_003925549.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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