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LOC115345977 bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 3 [ Aquila chrysaetos chrysaetos ]

Gene ID: 115345977, updated on 3-Aug-2024

Summary

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Gene symbol
LOC115345977
Gene description
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 3
See related
Ensembl:ENSACCG00020014156
Gene type
protein coding
RefSeq status
MODEL
Organism
Aquila chrysaetos chrysaetos (sub-species: chrysaetos)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Accipitrimorphae; Accipitriformes; Accipitridae; Accipitrinae; Aquila
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Genomic context

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See LOC115345977 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
20
Annotation release Status Assembly Chr Location
101 current bAquChr1.4 (GCF_900496995.4) 1 NC_044004.1 (79637563..79973768, complement)

Chromosome 1 - NC_044004.1Genomic Context describing neighboring genes Neighboring gene methyltransferase 14, N6-adenosine-methyltransferase non-catalytic subunit Neighboring gene small nucleolar RNA SNORA24 Neighboring gene serine protease 12 Neighboring gene uncharacterized LOC115342540 Neighboring gene uncharacterized LOC121233517

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044004.1 Chromosome 1 Reference bAquChr1.4

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine N-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Aquila chrysaetos chrysaetos Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bAquChr1.4

Genomic

  1. NC_044004.1 Reference bAquChr1.4

    Range
    79637563..79973768 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030025568.1 → XP_029881428.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 3 isoform X1

    UniProtKB/TrEMBL
    A0A663F7W1
    Conserved Domains (2) summary
    pfam00685
    Location:595 → 846
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:21 → 506
    HSNSD; heparan sulfate-N-deacetylase

  2. XM_030025577.2 → XP_029881437.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 3 isoform X1

    UniProtKB/TrEMBL
    A0A663F7W1
    Conserved Domains (2) summary
    pfam00685
    Location:595 → 846
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:21 → 506
    HSNSD; heparan sulfate-N-deacetylase

  3. XM_030025590.2 → XP_029881450.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 3 isoform X1

    UniProtKB/TrEMBL
    A0A663F7W1
    Related
    ENSACCP00020020567.1
    Conserved Domains (2) summary
    pfam00685
    Location:595 → 846
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:21 → 506
    HSNSD; heparan sulfate-N-deacetylase

  4. XM_030025559.1 → XP_029881419.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 3 isoform X1

    UniProtKB/TrEMBL
    A0A663F7W1
    Conserved Domains (2) summary
    pfam00685
    Location:595 → 846
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:21 → 506
    HSNSD; heparan sulfate-N-deacetylase

  5. XM_030025584.1 → XP_029881444.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 3 isoform X1

    UniProtKB/TrEMBL
    A0A663F7W1
    Conserved Domains (2) summary
    pfam00685
    Location:595 → 846
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:21 → 506
    HSNSD; heparan sulfate-N-deacetylase

  6. XM_030025598.1 → XP_029881458.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 3 isoform X2

    Conserved Domains (2) summary
    pfam00685
    Location:215 → 466
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:1 → 126
    HSNSD; heparan sulfate-N-deacetylase
Nucleotide Protein
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