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CNTN1 contactin 1 [ Aquila chrysaetos chrysaetos ]

Gene ID: 115341361, updated on 3-Aug-2024

Summary

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Gene symbol
CNTN1
Gene description
contactin 1
See related
Ensembl:ENSACCG00020015508
Gene type
protein coding
RefSeq status
MODEL
Organism
Aquila chrysaetos chrysaetos (sub-species: chrysaetos)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Accipitrimorphae; Accipitriformes; Accipitridae; Accipitrinae; Aquila
Orthologs
human mouse all
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Genomic context

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See CNTN1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
24
Annotation release Status Assembly Chr Location
101 current bAquChr1.4 (GCF_900496995.4) 5 NC_044008.1 (32040372..32295884)

Chromosome 5 - NC_044008.1Genomic Context describing neighboring genes Neighboring gene neuronal cell adhesion molecule Neighboring gene uncharacterized LOC115341362 Neighboring gene PDZ domain containing ring finger 4 Neighboring gene glucoside xylosyltransferase 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044008.1 Chromosome 5 Reference bAquChr1.4

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell-cell adhesion mediator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in brain development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
contactin-1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Aquila chrysaetos chrysaetos Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bAquChr1.4

Genomic

  1. NC_044008.1 Reference bAquChr1.4

    Range
    32040372..32295884
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030014181.2 → XP_029870041.1  contactin-1

    UniProtKB/TrEMBL
    A0A663FDJ6
    Related
    ENSACCP00020022563.1
    Conserved Domains (7) summary
    cd05727
    Location:139 → 235
    Ig2_Contactin-2-like; Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins
    cd05851
    Location:245 → 332
    Ig3_Contactin-1; Third immunoglobulin (Ig) domain of contactin-1
    cd05852
    Location:433 → 505
    Ig5_Contactin-1; Fifth immunoglobulin (Ig) domain of contactin-1
    cd00063
    Location:614 → 705
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd04970
    Location:524 → 605
    Ig6_Contactin; Sixth immunoglobulin (Ig) domain of contactin
    pfam00041
    Location:816 → 896
    fn3; Fibronectin type III domain
    cl11960
    Location:45 → 137
    Ig; Immunoglobulin domain
Nucleotide Protein
Heading Accession and Version

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