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UBXN2B UBX domain protein 2B [ Aquila chrysaetos chrysaetos ]

Gene ID: 115340135, updated on 17-Mar-2024

Summary

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Gene symbol
UBXN2B
Gene description
UBX domain protein 2B
See related
Ensembl:ENSACCG00020004062
Gene type
protein coding
RefSeq status
MODEL
Organism
Aquila chrysaetos chrysaetos (sub-species: chrysaetos)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Accipitriformes; Accipitridae; Accipitrinae; Aquila
Orthologs
human mouse all
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Genomic context

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See UBXN2B in Genome Data Viewer
Location:
chromosome: 4
Exon count:
12
Annotation release Status Assembly Chr Location
101 current bAquChr1.4 (GCF_900496995.4) 4 NC_044007.1 (41749560..41792079, complement)

Chromosome 4 - NC_044007.1Genomic Context describing neighboring genes Neighboring gene cytochrome P450 7A1 Neighboring gene syndecan binding protein Neighboring gene family with sequence similarity 110 member B Neighboring gene uncharacterized LOC115340746

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_044007.1 Chromosome 4 Reference bAquChr1.4

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in membrane fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear membrane reassembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UBX domain-containing protein 2B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Aquila chrysaetos chrysaetos Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bAquChr1.4

Genomic

  1. NC_044007.1 Reference bAquChr1.4

    Range
    41749560..41792079 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030011145.2 → XP_029867005.1  UBX domain-containing protein 2B isoform X5

    UniProtKB/TrEMBL
    A0A663E1A8
    Conserved Domains (2) summary
    smart00553
    Location:177 → 269
    SEP; Domain present in Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc), and vertebrate p47
    cl28922
    Location:287 → 315
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

  2. XM_030011144.2 → XP_029867004.1  UBX domain-containing protein 2B isoform X4

    UniProtKB/TrEMBL
    A0A663E1A8, A0A663E1U1
    Related
    ENSACCP00020005949.1
    Conserved Domains (2) summary
    smart00553
    Location:177 → 269
    SEP; Domain present in Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc), and vertebrate p47
    cl28922
    Location:287 → 316
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

  3. XM_030011143.2 → XP_029867003.1  UBX domain-containing protein 2B isoform X3

    Conserved Domains (2) summary
    smart00553
    Location:153 → 245
    SEP; Domain present in Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc), and vertebrate p47
    cl28922
    Location:263 → 291
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

  4. XM_030011141.2 → XP_029867001.1  UBX domain-containing protein 2B isoform X1

    UniProtKB/TrEMBL
    A0A663E1A8
    Conserved Domains (2) summary
    pfam08059
    Location:183 → 257
    SEP; SEP domain
    cl28922
    Location:287 → 315
    Ubiquitin_like_fold; Beta-grasp ubiquitin-like fold

  5. XM_041122980.1 → XP_040978914.1  UBX domain-containing protein 2B isoform X2

    UniProtKB/TrEMBL
    A0A663E1A8, A0A663E1U3
    Conserved Domains (2) summary
    smart00553
    Location:177 → 269
    SEP; Domain present in Saccharomyces cerevisiae Shp1, Drosophila melanogaster eyes closed gene (eyc), and vertebrate p47
    cd17161
    Location:287 → 368
    UBX_UBXN2B; Ubiquitin regulatory domain X (UBX) found in UBX domain protein 2B (UBXN2B) and similar proteins
Nucleotide Protein
Heading Accession and Version

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