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LOC115308161 uncharacterized LOC115308161 [ Homo sapiens (human) ]

Gene ID: 115308161, updated on 10-Oct-2023

Summary

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Gene symbol
LOC115308161
Gene description
uncharacterized LOC115308161
See related
Ensembl:ENSG00000271551
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
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Genomic context

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Location:
6q25.3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (156776360..156778518, complement)
RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (157978611..157980769, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (157097494..157099652, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124901444 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:157007142-157008069 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:157008070-157008996 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25313 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25314 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:157029670-157029847 Neighboring gene H3 histone pseudogene 28 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17707 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25315 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:157042423-157042971 Neighboring gene MPRA-validated peak6246 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25316 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25317 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25318 Neighboring gene Sharpr-MPRA regulatory region 1028 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17710 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17709 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17708 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17711 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17712 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:157099729-157100264 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17715 Neighboring gene MPRA-validated peak6247 silencer Neighboring gene microRNA 4466 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr6:157141145-157141772 Neighboring gene AT-rich interaction domain 1B Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17716 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:157150990-157151957 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:157173517-157174214 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:157174215-157174910 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25320 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25319 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17717 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:157234632-157235132 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25321 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:157263165-157263666 Neighboring gene Sharpr-MPRA regulatory region 494 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:157266367-157267095 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:157267096-157267823 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25322 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25323 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25324 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:157283836-157284476 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25325 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17718 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 17719 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:157370103-157370603 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:157369601-157370102 Neighboring gene MPRA-validated peak6251 silencer Neighboring gene MPRA-validated peak6252 silencer Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25326 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25327 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25328 Neighboring gene NANOG hESC enhancer GRCh37_chr6:157402195-157402696 Neighboring gene MPRA-validated peak6253 silencer Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:157466013-157466862 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:157466863-157467711 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:157471440-157471940 Neighboring gene Sharpr-MPRA regulatory region 1838 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:157507076-157507576 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:157507577-157508077 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:157528125-157528624 Neighboring gene uncharacterized LOC124901445

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_163974.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL355297
    Related
    ENST00000603191.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

    Range
    156776360..156778518 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060930.1 Alternate T2T-CHM13v2.0

    Range
    157978611..157980769 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases