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LOC115208746 rhomboid-related protein 3-like [ Salmo trutta (river trout) ]

Gene ID: 115208746, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115208746
Gene description
rhomboid-related protein 3-like
See related
Ensembl:ENSSTUG00000017111
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115208746 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
10
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 14 NC_042970.1 (67221306..67280383)

Chromosome 14 - NC_042970.1Genomic Context describing neighboring genes Neighboring gene mitochondrial Rho GTPase 1-A-like Neighboring gene uncharacterized LOC115147181 Neighboring gene BUB3-interacting and GLEBS motif-containing protein ZNF207-like Neighboring gene small nucleolar RNA SNORA49 Neighboring gene uncharacterized LOC115147185

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042970.1 Chromosome 14 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables serine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
rhomboid-related protein 3-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042970.1 Reference fSalTru1.1 Primary Assembly

    Range
    67221306..67280383
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029777073.1 → XP_029632933.1  rhomboid-related protein 3-like isoform X1

    UniProtKB/TrEMBL
    A0A673YZY7
    Related
    ENSSTUP00000040292.1, ENSSTUT00000042116.1

  2. XM_029777074.1 → XP_029632934.1  rhomboid-related protein 3-like isoform X2

    UniProtKB/TrEMBL
    A0A673YZY7, A0A673Z1Y5
    Related
    ENSSTUP00000040316.1, ENSSTUT00000042140.1

  3. XM_029777075.1 → XP_029632935.1  rhomboid-related protein 3-like isoform X3

    UniProtKB/TrEMBL
    A0A673YZY7
    Conserved Domains (2) summary
    COG5126
    Location:17 → 82
    FRQ1; Ca2+-binding protein, EF-hand superfamily [Signal transduction mechanisms]
    pfam01694
    Location:194 → 343
    Rhomboid; Rhomboid family
Nucleotide Protein
Heading Accession and Version

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