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LOC115208743 arf-GAP with dual PH domain-containing protein 2-like [ Salmo trutta (river trout) ]

Gene ID: 115208743, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115208743
Gene description
arf-GAP with dual PH domain-containing protein 2-like
See related
Ensembl:ENSSTUG00000015811
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115208743 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
12
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 14 NC_042970.1 (67165919..67173679)

Chromosome 14 - NC_042970.1Genomic Context describing neighboring genes Neighboring gene polycomb protein suz12-B-like Neighboring gene ATPase family AAA domain-containing protein 5-like Neighboring gene transcription elongation factor, mitochondrial Neighboring gene tripartite motif-containing protein 65-like Neighboring gene mitochondrial Rho GTPase 1-A-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042970.1 Chromosome 14 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables phosphatidylinositol bisphosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
arf-GAP with dual PH domain-containing protein 1-like; arf-GAP with dual PH domain-containing protein 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042970.1 Reference fSalTru1.1 Primary Assembly

    Range
    67165919..67173679
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029777066.1 → XP_029632926.1  arf-GAP with dual PH domain-containing protein 2-like isoform X1

    UniProtKB/TrEMBL
    A0A674ELY5
    Related
    ENSSTUP00000037175.1, ENSSTUT00000038841.1

  2. XM_029777067.1 → XP_029632927.1  arf-GAP with dual PH domain-containing protein 1-like isoform X2

    UniProtKB/TrEMBL
    A0A674ELY5
    Conserved Domains (3) summary
    cd13252
    Location:60 → 168
    PH1_ADAP; ArfGAP with dual PH domains Pleckstrin homology (PH) domain, repeat 1
    cl28907
    Location:1 → 41
    ArfGap; GTPase-activating protein (GAP) for the ADP ribosylation factors (ARFs)
    cl17171
    Location:184 → 289
    PH-like; Pleckstrin homology-like domain
Nucleotide Protein
Heading Accession and Version

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