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LOC115208322 carbohydrate sulfotransferase 11-like [ Salmo trutta (river trout) ]

Gene ID: 115208322, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115208322
Gene description
carbohydrate sulfotransferase 11-like
See related
Ensembl:ENSSTUG00000049042
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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Location:
chromosome: 14
Exon count:
4
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 14 NC_042970.1 (49792714..49818257)

Chromosome 14 - NC_042970.1Genomic Context describing neighboring genes Neighboring gene bridging integrator 2-like Neighboring gene thioredoxin reductase 1, cytoplasmic-like Neighboring gene solute carrier family 41 member 1-like Neighboring gene zinc finger protein 41-like Neighboring gene uncharacterized LOC115208326

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042970.1 Chromosome 14 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 11-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042970.1 Reference fSalTru1.1 Primary Assembly

    Range
    49792714..49818257
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029776274.1 → XP_029632134.1  carbohydrate sulfotransferase 11-like isoform X1

    UniProtKB/TrEMBL
    A0A674D6S6, A0A674ERG8
    Related
    ENSSTUP00000110595.1, ENSSTUT00000118396.1
    Conserved Domains (1) summary
    pfam03567
    Location:101 → 332
    Sulfotransfer_2; Sulfotransferase family

  2. XM_029776275.1 → XP_029632135.1  carbohydrate sulfotransferase 11-like isoform X2

    UniProtKB/TrEMBL
    A0A674D6S6
Nucleotide Protein
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Molecular Biology Databases