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cacna1da calcium channel, voltage-dependent, L type, alpha 1D subunit, a [ Salmo trutta (river trout) ]

Gene ID: 115208210, updated on 17-Mar-2024

Summary

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Gene symbol
cacna1da
Gene description
calcium channel, voltage-dependent, L type, alpha 1D subunit, a
See related
Ensembl:ENSSTUG00000047024
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Orthologs
zebrafish all
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Genomic context

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See cacna1da in Genome Data Viewer
Location:
chromosome: 14
Exon count:
49
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 14 NC_042970.1 (45159670..45279025, complement)

Chromosome 14 - NC_042970.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115208190 Neighboring gene voltage-dependent calcium channel subunit alpha-2/delta-3-like Neighboring gene uncharacterized LOC115208213 Neighboring gene transketolase a Neighboring gene protein bicaudal D homolog 2-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042970.1 Chromosome 14 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables high voltage-gated calcium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in calcium ion import across plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of voltage-gated calcium channel complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
voltage-dependent L-type calcium channel subunit alpha-1D-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042970.1 Reference fSalTru1.1 Primary Assembly

    Range
    45159670..45279025 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029776072.1 → XP_029631932.1  voltage-dependent L-type calcium channel subunit alpha-1D-like isoform X2

    UniProtKB/TrEMBL
    A0A674EVP0
    Related
    ENSSTUP00000111957.1, ENSSTUT00000119853.1
    Conserved Domains (4) summary
    pfam00520
    Location:1142 → 1406
    Ion_trans; Ion transport protein
    pfam08763
    Location:1479 → 1550
    Ca_chan_IQ; Voltage gated calcium channel IQ domain
    pfam16885
    Location:1574 → 2104
    CAC1F_C; Voltage-gated calcium channel subunit alpha, C-term
    pfam16905
    Location:1415 → 1468
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated

  2. XM_029776071.1 → XP_029631931.1  voltage-dependent L-type calcium channel subunit alpha-1D-like isoform X1

    UniProtKB/TrEMBL
    A0A674EX37
    Related
    ENSSTUP00000112197.1, ENSSTUT00000120102.1

  3. XM_029776073.1 → XP_029631933.1  voltage-dependent L-type calcium channel subunit alpha-1D-like isoform X3

    UniProtKB/TrEMBL
    A0A674EVP0
    Related
    ENSSTUP00000111879.1, ENSSTUT00000119776.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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