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LOC115208078 serine/arginine-rich splicing factor 3-like [ Salmo trutta (river trout) ]

Gene ID: 115208078, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115208078
Gene description
serine/arginine-rich splicing factor 3-like
See related
Ensembl:ENSSTUG00000009602
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115208078 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
7
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 14 NC_042970.1 (40327533..40334783, complement)

Chromosome 14 - NC_042970.1Genomic Context describing neighboring genes Neighboring gene mitochondrial mRNA pseudouridine synthase Trub2-like Neighboring gene ectonucleoside triphosphate diphosphohydrolase 8-like Neighboring gene uncharacterized LOC115208076 Neighboring gene peptidyl-prolyl cis-trans isomerase FKBP5-like Neighboring gene sodium- and chloride-dependent GABA transporter 2-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042970.1 Chromosome 14 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nuclear speck IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine/arginine-rich splicing factor 3-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042970.1 Reference fSalTru1.1 Primary Assembly

    Range
    40327533..40334783 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029775849.1 → XP_029631709.1  serine/arginine-rich splicing factor 3-like

    UniProtKB/TrEMBL
    A0A673XK06
    Conserved Domains (1) summary
    cl17169
    Location:10 → 90
    RRM_SF; RNA recognition motif (RRM) superfamily

  2. XM_029775850.1 → XP_029631710.1  serine/arginine-rich splicing factor 3-like

    UniProtKB/TrEMBL
    A0A673XK06
    Related
    ENSSTUP00000021733.1, ENSSTUT00000022830.1
    Conserved Domains (1) summary
    cl17169
    Location:10 → 90
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
Heading Accession and Version

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