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ikbke inhibitor of nuclear factor kappa B kinase subunit epsilon [ Salmo trutta (river trout) ]

Gene ID: 115207524, updated on 12-Sep-2024

Summary

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Gene symbol
ikbke
Gene description
inhibitor of nuclear factor kappa B kinase subunit epsilon
See related
Ensembl:ENSSTUG00000031086
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Orthologs
zebrafish all
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Genomic context

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See ikbke in Genome Data Viewer
Location:
chromosome: 14
Exon count:
23
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 14 NC_042970.1 (16743916..16770751)

Chromosome 14 - NC_042970.1Genomic Context describing neighboring genes Neighboring gene protein FAM72A-like Neighboring gene SLIT-ROBO Rho GTPase-activating protein 2-like Neighboring gene outer dynein arm docking complex subunit 1 Neighboring gene Ras association domain family member 5 Neighboring gene serine/arginine-rich splicing factor 6-like Neighboring gene uncharacterized LOC115207527

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042970.1 Chromosome 14 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-serine phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
inhibitor of nuclear factor kappa-B kinase subunit epsilon-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042970.1 Reference fSalTru1.1 Primary Assembly

    Range
    16743916..16770751
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029774663.1 → XP_029630523.1  inhibitor of nuclear factor kappa-B kinase subunit epsilon-like

    UniProtKB/TrEMBL
    A0A674BHY3, A0A674BJ47

  2. XM_029774662.1 → XP_029630522.1  inhibitor of nuclear factor kappa-B kinase subunit epsilon-like

    UniProtKB/TrEMBL
    A0A674BHY3, A0A674BJ47
    Related
    ENSSTUP00000071022.1, ENSSTUT00000075397.1
    Conserved Domains (3) summary
    pfam18394
    Location:404 → 652
    TBK1_CCD1; TANK-binding kinase 1 coiled-coil domain 1
    pfam18396
    Location:312 → 399
    TBK1_ULD; TANK binding kinase 1 ubiquitin-like domain
    cl21453
    Location:20 → 331
    PKc_like; Protein Kinases, catalytic domain
Nucleotide Protein
Heading Accession and Version

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