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LOC115207511 alpha-1,3-galactosyltransferase 2-like [ Salmo trutta (river trout) ]

Gene ID: 115207511, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115207511
Gene description
alpha-1,3-galactosyltransferase 2-like
See related
Ensembl:ENSSTUG00000027207
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115207511 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
7
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 14 NC_042970.1 (16251851..16266286, complement)

Chromosome 14 - NC_042970.1Genomic Context describing neighboring genes Neighboring gene phosphopantothenate--cysteine ligase-like Neighboring gene epithelial membrane protein 3-like Neighboring gene zinc finger protein 362-like Neighboring gene uncharacterized LOC115207513 Neighboring gene E3 ubiquitin-protein ligase TRIM62-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042970.1 Chromosome 14 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hexosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lipid glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-1,3-galactosyltransferase 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042970.1 Reference fSalTru1.1 Primary Assembly

    Range
    16251851..16266286 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029774626.1 → XP_029630486.1  alpha-1,3-galactosyltransferase 2-like

    UniProtKB/TrEMBL
    A0A674AWA5
    Conserved Domains (1) summary
    cl11394
    Location:66 → 335
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  2. XM_029774625.1 → XP_029630485.1  alpha-1,3-galactosyltransferase 2-like

    UniProtKB/TrEMBL
    A0A674AWA5
    Conserved Domains (1) summary
    cl11394
    Location:66 → 335
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  3. XM_029774628.1 → XP_029630488.1  alpha-1,3-galactosyltransferase 2-like

    UniProtKB/TrEMBL
    A0A674AWA5

  4. XM_029774624.1 → XP_029630484.1  alpha-1,3-galactosyltransferase 2-like

    UniProtKB/TrEMBL
    A0A674AWA5
    Related
    ENSSTUP00000062761.1, ENSSTUT00000066204.1
    Conserved Domains (1) summary
    cl11394
    Location:66 → 335
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold
Nucleotide Protein
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