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LOC115206455 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1-like [ Salmo trutta (river trout) ]

Gene ID: 115206455, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115206455
Gene description
galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1-like
See related
Ensembl:ENSSTUG00000033284
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115206455 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
8
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 13 NC_042969.1 (70558758..70679683, complement)

Chromosome 13 - NC_042969.1Genomic Context describing neighboring genes Neighboring gene beta-galactosidase-1-like protein 2 Neighboring gene galactosidase beta 1 like 2 Neighboring gene beta-galactosidase-1-like protein 2 Neighboring gene transforming growth factor beta regulator 1-like Neighboring gene collagenase 3-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042969.1 Chromosome 13 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chondroitin sulfate proteoglycan biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042969.1 Reference fSalTru1.1 Primary Assembly

    Range
    70558758..70679683 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029773487.1 → XP_029629347.1  galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1-like

    UniProtKB/TrEMBL
    A0A674BWP5, A0A674BX50
    Related
    ENSSTUP00000075832.1, ENSSTUT00000080606.1
    Conserved Domains (1) summary
    cd00218
    Location:85 → 317
    GlcAT-I; Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis

  2. XM_029773484.1 → XP_029629344.1  galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1-like

    UniProtKB/TrEMBL
    A0A674BWP5, A0A674BX50
    Related
    ENSSTUP00000075810.1, ENSSTUT00000080578.1
    Conserved Domains (1) summary
    cd00218
    Location:85 → 317
    GlcAT-I; Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis

  3. XM_029773486.1 → XP_029629346.1  galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1-like

    UniProtKB/TrEMBL
    A0A674BWP5, A0A674BX50
    Conserved Domains (1) summary
    cd00218
    Location:85 → 317
    GlcAT-I; Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis

  4. XM_029773485.1 → XP_029629345.1  galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase 1-like

    UniProtKB/TrEMBL
    A0A674BWP5, A0A674BX50
    Conserved Domains (1) summary
    cd00218
    Location:85 → 317
    GlcAT-I; Beta1,3-glucuronyltransferase I (GlcAT-I) is involved in the initial steps of proteoglycan synthesis
Nucleotide Protein
Heading Accession and Version

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