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LOC115206423 gamma-sarcoglycan-like [ Salmo trutta (river trout) ]

Gene ID: 115206423, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115206423
Gene description
gamma-sarcoglycan-like
See related
Ensembl:ENSSTUG00000030248
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115206423 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
8
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 13 NC_042969.1 (68710925..68724162, complement)

Chromosome 13 - NC_042969.1Genomic Context describing neighboring genes Neighboring gene tumor necrosis factor receptor superfamily member 19-like Neighboring gene sacsin-like Neighboring gene 40S ribosomal protein S25-like Neighboring gene trafficking protein particle complex subunit 4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042969.1 Chromosome 13 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cardiac muscle tissue development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in heart contraction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of sarcoglycan complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in sarcolemma IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
gamma-sarcoglycan-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042969.1 Reference fSalTru1.1 Primary Assembly

    Range
    68710925..68724162 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029773410.1 → XP_029629270.1  gamma-sarcoglycan-like isoform X2

  2. XM_029773409.1 → XP_029629269.1  gamma-sarcoglycan-like isoform X1

    UniProtKB/TrEMBL
    A0A674BD19, A0A674E0F2

  3. XM_029773408.1 → XP_029629268.1  gamma-sarcoglycan-like isoform X1

    UniProtKB/TrEMBL
    A0A674BD19, A0A674E0F2
    Related
    ENSSTUP00000068902.1, ENSSTUT00000073179.1
    Conserved Domains (1) summary
    pfam04790
    Location:25 → 278
    Sarcoglycan_1; Sarcoglycan complex subunit protein
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases