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LOC115206402 uncharacterized LOC115206402 [ Salmo trutta (river trout) ]

Gene ID: 115206402, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115206402
Gene description
uncharacterized LOC115206402
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115206402 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
12
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 13 NC_042969.1 (68092446..68107744, complement)

Chromosome 13 - NC_042969.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein S6 kinase beta-1-like Neighboring gene tubulin delta chain-like Neighboring gene vacuole membrane protein 1-like Neighboring gene uncharacterized LOC115204941 Neighboring gene nuclear protein, ataxia-telangiectasia locus

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042969.1 Chromosome 13 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables telomeric DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of telomere maintenance via telomere lengthening IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in telomere capping IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of shelterin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC115206402

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042969.1 Reference fSalTru1.1 Primary Assembly

    Range
    68092446..68107744 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029773321.1 → XP_029629181.1  uncharacterized protein LOC115206402

    Conserved Domains (5) summary
    cd11657
    Location:490 → 672
    TIN2_N; N-terminal domain of TRF-interacting nuclear factor 2; shelterin complex protein of telomeres
    sd00017
    Location:963 → 983
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:989 → 1011
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:1003 → 1028
    zf-H2C2_2; Zinc-finger double domain
    pfam13837
    Location:188 → 276
    Myb_DNA-bind_4; Myb/SANT-like DNA-binding domain
Nucleotide Protein
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