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LOC115205393 bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1-like [ Salmo trutta (river trout) ]

Gene ID: 115205393, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115205393
Gene description
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1-like
See related
Ensembl:ENSSTUG00000006043
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115205393 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
17
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 13 NC_042969.1 (19164709..19254040, complement)

Chromosome 13 - NC_042969.1Genomic Context describing neighboring genes Neighboring gene SLC35A4 upstream open reading frame protein-like Neighboring gene HMG-box containing 3 Neighboring gene HLA class II histocompatibility antigen gamma chain-like Neighboring gene pre-mRNA-splicing factor RBM22-like Neighboring gene myozenin-2-like Neighboring gene uncharacterized LOC115205399

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042969.1 Chromosome 13 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables [heparan sulfate]-glucosamine N-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042969.1 Reference fSalTru1.1 Primary Assembly

    Range
    19164709..19254040 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029771340.1 → XP_029627200.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1-like isoform X1

    UniProtKB/TrEMBL
    A0A673WMB4, A0A673WX04

  2. XM_029771339.1 → XP_029627199.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1-like isoform X1

    UniProtKB/TrEMBL
    A0A673WMB4, A0A673WX04
    Related
    ENSSTUP00000013130.1, ENSSTUT00000013885.1

  3. XM_029771341.1 → XP_029627201.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1-like isoform X1

    UniProtKB/TrEMBL
    A0A673WMB4, A0A673WX04
    Related
    ENSSTUP00000013194.1, ENSSTUT00000013948.1

  4. XM_029771342.1 → XP_029627202.1  bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1-like isoform X2

    UniProtKB/TrEMBL
    A0A673WYM0
    Conserved Domains (2) summary
    pfam00685
    Location:514 → 764
    Sulfotransfer_1; Sulfotransferase domain
    pfam12062
    Location:84 → 424
    HSNSD; heparan sulfate-N-deacetylase
Nucleotide Protein
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