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LOC115204697 baculoviral IAP repeat-containing protein 2-like [ Salmo trutta (river trout) ]

Gene ID: 115204697, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115204697
Gene description
baculoviral IAP repeat-containing protein 2-like
See related
Ensembl:ENSSTUG00000021854
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115204697 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
18
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 12 NC_042968.1 (96509301..96546082, complement)

Chromosome 12 - NC_042968.1Genomic Context describing neighboring genes Neighboring gene DNA damage-induced apoptosis suppressor Neighboring gene polymerase (DNA directed), theta Neighboring gene complement component 1, q subcomponent, A chain Neighboring gene complement component 1, q subcomponent, C chain

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042968.1 Chromosome 12 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in regulation of apoptotic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
baculoviral IAP repeat-containing protein 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042968.1 Reference fSalTru1.1 Primary Assembly

    Range
    96509301..96546082 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029770421.1 → XP_029626281.1  baculoviral IAP repeat-containing protein 2-like isoform X3

    UniProtKB/TrEMBL
    A0A673ZYQ5, A0A674A0F1
    Related
    ENSSTUP00000051721.1, ENSSTUT00000054081.1
    Conserved Domains (5) summary
    cd00022
    Location:291 → 358
    BIR; Baculoviral inhibition of apoptosis protein repeat domain; Found in inhibitors of apoptosis proteins (IAPs) and other proteins. In higher eukaryotes, BIR domains inhibit apoptosis by acting as direct inhibitors of the caspase family of protease enzymes. ...
    cd14394
    Location:412 → 461
    UBA_BIRC2_3; UBA domain found in baculoviral IAP repeat-containing protein BIRC2, BIRC3 and similar proteins
    cd16713
    Location:585 → 638
    RING-HC_BIRC2_3_7; RING finger, HC subclass, found in apoptosis protein c-IAP1, c-IAP2, livin, and similar proteins
    pfam00653
    Location:183 → 247
    BIR; Inhibitor of Apoptosis domain
    cl14633
    Location:474 → 564
    DD; Death Domain Superfamily of protein-protein interaction domains

  2. XM_029770419.1 → XP_029626279.1  baculoviral IAP repeat-containing protein 2-like isoform X1

    UniProtKB/TrEMBL
    A0A674A1A4
    Conserved Domains (4) summary
    cd00022
    Location:291 → 358
    BIR; Baculoviral inhibition of apoptosis protein repeat domain; Found in inhibitors of apoptosis proteins (IAPs) and other proteins. In higher eukaryotes, BIR domains inhibit apoptosis by acting as direct inhibitors of the caspase family of protease enzymes. ...
    cd14394
    Location:412 → 461
    UBA_BIRC2_3; UBA domain found in baculoviral IAP repeat-containing protein BIRC2, BIRC3 and similar proteins
    pfam00653
    Location:35 → 99
    BIR; Inhibitor of Apoptosis domain
    cl14633
    Location:486 → 548
    DD; Death Domain Superfamily of protein-protein interaction domains

  3. XM_029770420.1 → XP_029626280.1  baculoviral IAP repeat-containing protein 2-like isoform X2

    UniProtKB/TrEMBL
    A0A674A1A4
    Conserved Domains (4) summary
    cd00022
    Location:291 → 358
    BIR; Baculoviral inhibition of apoptosis protein repeat domain; Found in inhibitors of apoptosis proteins (IAPs) and other proteins. In higher eukaryotes, BIR domains inhibit apoptosis by acting as direct inhibitors of the caspase family of protease enzymes. ...
    cd14394
    Location:412 → 461
    UBA_BIRC2_3; UBA domain found in baculoviral IAP repeat-containing protein BIRC2, BIRC3 and similar proteins
    pfam00653
    Location:183 → 247
    BIR; Inhibitor of Apoptosis domain
    cl14633
    Location:474 → 534
    DD; Death Domain Superfamily of protein-protein interaction domains
Nucleotide Protein
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