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lman2la lectin, mannose-binding 2-like a [ Salmo trutta (river trout) ]

Gene ID: 115204064, updated on 19-Jun-2024

Summary

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Gene symbol
lman2la
Gene description
lectin, mannose-binding 2-like a
See related
Ensembl:ENSSTUG00000014261
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Also known as
lman2l
Orthologs
zebrafish all
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Genomic context

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See lman2la in Genome Data Viewer
Location:
chromosome: 12
Exon count:
9
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 12 NC_042968.1 (68639652..68644457, complement)

Chromosome 12 - NC_042968.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115202752 Neighboring gene WW domain-binding protein 1-like Neighboring gene mitochondrial fission process protein 1-like Neighboring gene uncharacterized LOC115202753

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042968.1 Chromosome 12 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-mannose binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in COPII-coated ER to Golgi transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum-Golgi intermediate compartment IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
VIP36-like protein
Names
lectin, mannose binding 2 like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042968.1 Reference fSalTru1.1 Primary Assembly

    Range
    68639652..68644457 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029769331.1 → XP_029625191.1  VIP36-like protein isoform X2

    UniProtKB/TrEMBL
    A0A673YG31, A0A673YGD3
    Related
    ENSSTUP00000033504.1, ENSSTUT00000035012.1
    Conserved Domains (1) summary
    cl14058
    Location:31 → 279
    lectin_L-type; legume lectins

  2. XM_029769332.1 → XP_029625192.1  VIP36-like protein isoform X3

    UniProtKB/TrEMBL
    A0A673YGA6
    Related
    ENSSTUP00000033479.1, ENSSTUT00000034983.1
    Conserved Domains (1) summary
    cl14058
    Location:31 → 290
    lectin_L-type; legume lectins

  3. XM_029769330.1 → XP_029625190.1  VIP36-like protein isoform X1

    UniProtKB/TrEMBL
    A0A673YG31
    Related
    ENSSTUP00000033409.1, ENSSTUT00000034906.1
Nucleotide Protein
Heading Accession and Version

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