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LOC115204025 crk-like protein [ Salmo trutta (river trout) ]

Gene ID: 115204025, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115204025
Gene description
crk-like protein
See related
Ensembl:ENSSTUG00000025694
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115204025 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
3
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 12 NC_042968.1 (67250562..67268522)

Chromosome 12 - NC_042968.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115204024 Neighboring gene sphingomyelin phosphodiesterase 4 Neighboring gene mediator of RNA polymerase II transcription subunit 15-like Neighboring gene T-box-containing protein TBX6L-like Neighboring gene phosphoglycerate mutase 2-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042968.1 Chromosome 12 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of ERK1 and ERK2 cascade IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
crk-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042968.1 Reference fSalTru1.1 Primary Assembly

    Range
    67250562..67268522
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029769246.1 → XP_029625106.1  crk-like protein

    UniProtKB/TrEMBL
    A0A674AMN7
    Related
    ENSSTUP00000059621.1, ENSSTUT00000062749.1
    Conserved Domains (3) summary
    cd09926
    Location:6 → 106
    SH2_CRK_like; Src homology 2 domain found in cancer-related signaling adaptor protein CRK
    cd11758
    Location:126 → 180
    SH3_CRK_N; N-terminal Src Homology 3 domain of Ct10 Regulator of Kinase adaptor proteins
    cl17036
    Location:238 → 294
    SH3; Src Homology 3 domain superfamily
Nucleotide Protein
Heading Accession and Version

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