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LOC115203119 tumor necrosis factor receptor type 1-associated DEATH domain protein-like [ Salmo trutta (river trout) ]

Gene ID: 115203119, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115203119
Gene description
tumor necrosis factor receptor type 1-associated DEATH domain protein-like
See related
Ensembl:ENSSTUG00000050327
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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Location:
chromosome: 12
Exon count:
7
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 12 NC_042968.1 (20077262..20090636, complement)

Chromosome 12 - NC_042968.1Genomic Context describing neighboring genes Neighboring gene conserved oligomeric Golgi complex subunit 4-like Neighboring gene guanine nucleotide-binding protein G(o) subunit alpha-like Neighboring gene prolyl 3-hydroxylase OGFOD1-like Neighboring gene cleavage and polyadenylation specificity factor subunit 5-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042968.1 Chromosome 12 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables transmembrane receptor protein tyrosine kinase adaptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in extrinsic apoptotic signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of tumor necrosis factor receptor superfamily complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tumor necrosis factor receptor type 1-associated DEATH domain protein-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042968.1 Reference fSalTru1.1 Primary Assembly

    Range
    20077262..20090636 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029767506.1 → XP_029623366.1  tumor necrosis factor receptor type 1-associated DEATH domain protein-like

    UniProtKB/TrEMBL
    A0A674CFS8, A0A674F0H7

  2. XM_029767507.1 → XP_029623367.1  tumor necrosis factor receptor type 1-associated DEATH domain protein-like

    UniProtKB/TrEMBL
    A0A674CFS8, A0A674F0H7
    Related
    ENSSTUP00000114078.1, ENSSTUT00000122094.1
    Conserved Domains (2) summary
    pfam09034
    Location:58 → 168
    TRADD_N; TRADD, N-terminal domain
    cl14633
    Location:209 → 295
    DD; Death Domain Superfamily of protein-protein interaction domains
Nucleotide Protein
Heading Accession and Version

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