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LOC115202940 probable C-mannosyltransferase DPY19L3 [ Salmo trutta (river trout) ]

Gene ID: 115202940, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115202940
Gene description
probable C-mannosyltransferase DPY19L3
See related
Ensembl:ENSSTUG00000022506
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115202940 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
24
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 12 NC_042968.1 (12982588..13020944)

Chromosome 12 - NC_042968.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115202695 Neighboring gene zinc finger protein 507-like Neighboring gene neural-cadherin-like Neighboring gene transfer RNA alanine (anticodon UGC) Neighboring gene uncharacterized LOC115202942

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042968.1 Chromosome 12 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein C-linked glycosylation via 2'-alpha-mannosyl-L-tryptophan IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nuclear inner membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable C-mannosyltransferase DPY19L3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042968.1 Reference fSalTru1.1 Primary Assembly

    Range
    12982588..13020944
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029767131.1 → XP_029622991.1  probable C-mannosyltransferase DPY19L3 isoform X2

    UniProtKB/TrEMBL
    A0A673WME6, A0A674A545
    Related
    ENSSTUP00000053401.1, ENSSTUT00000055823.1
    Conserved Domains (1) summary
    pfam10034
    Location:58 → 715
    Dpy19; Q-cell neuroblast polarisation

  2. XM_029767133.1 → XP_029622993.1  probable C-mannosyltransferase DPY19L3 isoform X2

    UniProtKB/TrEMBL
    A0A673WME6, A0A674A545
    Related
    ENSSTUP00000053632.1, ENSSTUT00000056063.1
    Conserved Domains (1) summary
    pfam10034
    Location:58 → 715
    Dpy19; Q-cell neuroblast polarisation

  3. XM_029767132.1 → XP_029622992.1  probable C-mannosyltransferase DPY19L3 isoform X2

    UniProtKB/TrEMBL
    A0A673WME6, A0A674A545

  4. XM_029767134.1 → XP_029622994.1  probable C-mannosyltransferase DPY19L3 isoform X3

    UniProtKB/TrEMBL
    A0A674A3Z5

  5. XM_029767129.1 → XP_029622989.1  probable C-mannosyltransferase DPY19L3 isoform X1

    UniProtKB/TrEMBL
    A0A673WN68, A0A674A4E7
    Related
    ENSSTUP00000053782.1, ENSSTUT00000056226.1

  6. XM_029767136.1 → XP_029622996.1  probable C-mannosyltransferase DPY19L3 isoform X5

    UniProtKB/TrEMBL
    A0A674A3Z5
    Conserved Domains (1) summary
    pfam10034
    Location:1 → 583
    Dpy19; Q-cell neuroblast polarisation

  7. XM_029767137.1 → XP_029622997.1  probable C-mannosyltransferase DPY19L3 isoform X5

    UniProtKB/TrEMBL
    A0A674A3Z5

  8. XM_029767135.1 → XP_029622995.1  probable C-mannosyltransferase DPY19L3 isoform X4

    UniProtKB/TrEMBL
    A0A674A3Z5

RNA

  1. XR_003880086.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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