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LOC115201647 suppressor of cytokine signaling 3-like [ Salmo trutta (river trout) ]

Gene ID: 115201647, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115201647
Gene description
suppressor of cytokine signaling 3-like
See related
Ensembl:ENSSTUG00000048880
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115201647 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
3
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 10 NC_042966.1 (35583527..35590615, complement)

Chromosome 10 - NC_042966.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 100-like Neighboring gene uncharacterized LOC115201646 Neighboring gene CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, mitochondrial-like Neighboring gene extensin-like Neighboring gene U7 small nuclear RNA Neighboring gene dynein axonemal heavy chain 17

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042966.1 Chromosome 10 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 1-phosphatidylinositol-3-kinase regulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in phosphatidylinositol phosphate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of phosphatidylinositol 3-kinase complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
suppressor of cytokine signaling 3-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042966.1 Reference fSalTru1.1 Primary Assembly

    Range
    35583527..35590615 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029765448.1 → XP_029621308.1  suppressor of cytokine signaling 3-like

    UniProtKB/TrEMBL
    A0A674ER28
    Related
    ENSSTUP00000110152.1, ENSSTUT00000117936.1
    Conserved Domains (2) summary
    cl02533
    Location:180 → 223
    SOCS; SOCS (suppressors of cytokine signaling) box. The SOCS box is found in the C-terminal region of CIS/SOCS family proteins (in combination with a SH2 domain), ASBs (ankyrin repeat-containing proteins with a SOCS box), SSBs (SPRY domain-containing proteins ...
    cl15255
    Location:36 → 127
    SH2; Src homology 2 (SH2) domain
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases