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LOC115201626 chitin synthase chs-2-like [ Salmo trutta (river trout) ]

Gene ID: 115201626, updated on 26-Jun-2024

Summary

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Gene symbol
LOC115201626
Gene description
chitin synthase chs-2-like
See related
Ensembl:ENSSTUG00000048274
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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Location:
chromosome: 10
Exon count:
19
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 10 NC_042966.1 (35177595..35193656, complement)

Chromosome 10 - NC_042966.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115200883 Neighboring gene mitochondrial pyruvate carrier 1-like Neighboring gene membrane-spanning 4-domains subfamily A member 15-like Neighboring gene myoneurin-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042966.1 Chromosome 10 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chitin synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell periphery IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cell septum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chitin synthase chs-2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042966.1 Reference fSalTru1.1 Primary Assembly

    Range
    35177595..35193656 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029765411.1 → XP_029621271.1  chitin synthase chs-2-like isoform X1

    UniProtKB/TrEMBL
    A0A674ELN5
    Conserved Domains (3) summary
    TIGR04397
    Location:1191 → 1334
    SecA2_Bac_anthr; accessory Sec system translocase SecA2, Bacillus type
    pfam03142
    Location:682 → 1024
    Chitin_synth_2; Chitin synthase
    cl11394
    Location:498 → 839
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

  2. XM_029765412.1 → XP_029621272.1  chitin synthase chs-2-like isoform X2

    UniProtKB/TrEMBL
    A0A674ELN5, A0A674EM26
    Related
    ENSSTUP00000108747.1, ENSSTUT00000116456.1
Nucleotide Protein
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