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LOC115201307 zinc finger protein 888-like [ Salmo trutta (river trout) ]

Gene ID: 115201307, updated on 16-Nov-2020

Summary

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Gene symbol
LOC115201307
Gene description
zinc finger protein 888-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115201307 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
9
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 10 NC_042966.1 (20459283..20472519)

Chromosome 10 - NC_042966.1Genomic Context describing neighboring genes Neighboring gene ER lumen protein-retaining receptor 2 Neighboring gene uncharacterized LOC115201309 Neighboring gene cerebellar degeneration-related protein 2-like Neighboring gene DNA-directed RNA polymerase III subunit RPC5-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042966.1 Chromosome 10 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
zinc finger protein 888-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042966.1 Reference fSalTru1.1 Primary Assembly

    Range
    20459283..20472519
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029764826.1 → XP_029620686.1  zinc finger protein 888-like isoform X3

  2. XM_029764825.1 → XP_029620685.1  zinc finger protein 888-like isoform X2

  3. XM_029764824.1 → XP_029620684.1  zinc finger protein 888-like isoform X1

    Conserved Domains (4) summary
    COG5048
    Location:441 → 889
    COG5048; FOG: Zn-finger [General function prediction only]
    cd11657
    Location:22 → 208
    TIN2_N; N-terminal domain of TRF-interacting nuclear factor 2; shelterin complex protein of telomeres
    sd00017
    Location:889 → 911
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:903 → 928
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
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