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LOC115200391 VIP36-like protein [ Salmo trutta (river trout) ]

Gene ID: 115200391, updated on 19-Jun-2024

Summary

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Gene symbol
LOC115200391
Gene description
VIP36-like protein
See related
Ensembl:ENSSTUG00000005059
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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Location:
chromosome: 9
Exon count:
9
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 9 NC_042965.1 (30870842..30877595)

Chromosome 9 - NC_042965.1Genomic Context describing neighboring genes Neighboring gene T-box transcription factor TBX3-like Neighboring gene TM2 domain containing 2 Neighboring gene leukocyte surface antigen CD53-like Neighboring gene serine/threonine-protein kinase A-Raf-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042965.1 Chromosome 9 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-mannose binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in Golgi organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in COPII-coated ER to Golgi transport vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum-Golgi intermediate compartment IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
VIP36-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042965.1 Reference fSalTru1.1 Primary Assembly

    Range
    30870842..30877595
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029763425.1 → XP_029619285.1  VIP36-like protein

    UniProtKB/TrEMBL
    A0A673WR91
    Related
    ENSSTUP00000010566.1, ENSSTUT00000011240.1
    Conserved Domains (1) summary
    cl14058
    Location:52 → 304
    lectin_L-type; legume lectins
Nucleotide Protein
Heading Accession and Version

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