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pomt1 protein-O-mannosyltransferase 1 [ Salmo trutta (river trout) ]

Gene ID: 115199786, updated on 17-Mar-2024

Summary

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Gene symbol
pomt1
Gene description
protein-O-mannosyltransferase 1
See related
Ensembl:ENSSTUG00000011597
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
Orthologs
human zebrafish all
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Genomic context

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See pomt1 in Genome Data Viewer
Location:
chromosome: 9
Exon count:
20
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 9 NC_042965.1 (8237870..8251070)

Chromosome 9 - NC_042965.1Genomic Context describing neighboring genes Neighboring gene mediator of RNA polymerase II transcription subunit 27-like Neighboring gene rap guanine nucleotide exchange factor 1-like Neighboring gene caspase recruitment domain-containing protein 9-like Neighboring gene snRNA-activating protein complex subunit 4-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042965.1 Chromosome 9 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dolichyl-phosphate-mannose-protein mannosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein O-linked mannosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein O-mannosyl-transferase 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042965.1 Reference fSalTru1.1 Primary Assembly

    Range
    8237870..8251070
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029762219.1 → XP_029618079.1  protein O-mannosyl-transferase 1

    UniProtKB/TrEMBL
    A0A673XWE5
    Related
    ENSSTUP00000026703.1, ENSSTUT00000027971.1
    Conserved Domains (1) summary
    COG1928
    Location:23 → 726
    PMT1; Dolichyl-phosphate-mannose--protein O-mannosyl transferase [Posttranslational modification, protein turnover, chaperones]
Nucleotide Protein
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