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LOC115199174 zinc finger protein 135-like [ Salmo trutta (river trout) ]

Gene ID: 115199174, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115199174
Gene description
zinc finger protein 135-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115199174 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
9
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 8 NC_042964.1 (50713826..50720555, complement)

Chromosome 8 - NC_042964.1Genomic Context describing neighboring genes Neighboring gene probable tRNA N6-adenosine threonylcarbamoyltransferase Neighboring gene DNA-(apurinic or apyrimidinic site) lyase-like Neighboring gene zinc finger protein 540-like Neighboring gene zinc finger protein 135-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042964.1 Chromosome 8 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cytokine production IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of immune system process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 135-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042964.1 Reference fSalTru1.1 Primary Assembly

    Range
    50713826..50720555 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029761805.1 → XP_029617665.1  zinc finger protein 135-like isoform X2

  2. XM_029761804.1 → XP_029617664.1  zinc finger protein 135-like isoform X1

    Conserved Domains (5) summary
    COG5048
    Location:663 → 1028
    COG5048; FOG: Zn-finger [General function prediction only]
    COG5189
    Location:595 → 713
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    cd11657
    Location:26 → 209
    TIN2_N; N-terminal domain of TRF-interacting nuclear factor 2; shelterin complex protein of telomeres
    sd00017
    Location:949 → 969
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:439 → 459
    ZF_C2H2; C2H2 Zn finger [structural motif]
Nucleotide Protein
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