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LOC115199172 zinc finger protein 14-like [ Salmo trutta (river trout) ]

Gene ID: 115199172, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115199172
Gene description
zinc finger protein 14-like
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115199172 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
7
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 8 NC_042964.1 (50747649..50756851, complement)

Chromosome 8 - NC_042964.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 135-like Neighboring gene uncharacterized LOC115199176 Neighboring gene zinc finger protein 14-like Neighboring gene N-acylneuraminate cytidylyltransferase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042964.1 Chromosome 8 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II transcription regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables telomeric DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of telomere maintenance via telomere lengthening IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in telomere capping IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of shelterin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC115199172; zinc finger protein 14-like; zinc finger protein 721-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042964.1 Reference fSalTru1.1 Primary Assembly

    Range
    50747649..50756851 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029761798.1 → XP_029617658.1  zinc finger protein 721-like isoform X1

  2. XM_029761799.1 → XP_029617659.1  zinc finger protein 14-like isoform X2

    Conserved Domains (4) summary
    COG5048
    Location:632 → 934
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:857 → 877
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:897 → 921
    zf-H2C2_2; Zinc-finger double domain
    cl18929
    Location:1 → 51
    TIN2_N; N-terminal domain of TRF-interacting nuclear factor 2; shelterin complex protein of telomeres

  3. XM_029761800.1 → XP_029617660.1  uncharacterized protein LOC115199172 isoform X3

    Conserved Domains (1) summary
    cd11657
    Location:21 → 141
    TIN2_N; N-terminal domain of TRF-interacting nuclear factor 2; shelterin complex protein of telomeres
Nucleotide Protein
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