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LOC115198924 probable polypeptide N-acetylgalactosaminyltransferase 8 [ Salmo trutta (river trout) ]

Gene ID: 115198924, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115198924
Gene description
probable polypeptide N-acetylgalactosaminyltransferase 8
See related
Ensembl:ENSSTUG00000018184
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115198924 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
11
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 8 NC_042964.1 (40276217..40284887)

Chromosome 8 - NC_042964.1Genomic Context describing neighboring genes Neighboring gene RAD51-associated protein 1-like Neighboring gene dual specificity tyrosine-phosphorylation-regulated kinase 4-like Neighboring gene probable polypeptide N-acetylgalactosaminyltransferase 8 Neighboring gene probable polypeptide N-acetylgalactosaminyltransferase 8

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042964.1 Chromosome 8 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable polypeptide N-acetylgalactosaminyltransferase 8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042964.1 Reference fSalTru1.1 Primary Assembly

    Range
    40276217..40284887
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029761340.1 → XP_029617200.1  probable polypeptide N-acetylgalactosaminyltransferase 8

    UniProtKB/TrEMBL
    A0A674DHJ5
    Related
    ENSSTUP00000043063.1, ENSSTUT00000044960.1
    Conserved Domains (2) summary
    cd02510
    Location:161 → 462
    pp-GalNAc-T; pp-GalNAc-T initiates the formation of mucin-type O-linked glycans
    cd00161
    Location:475 → 600
    RICIN; Ricin-type beta-trefoil; Carbohydrate-binding domain formed from presumed gene triplication. The domain is found in a variety of molecules serving diverse functions such as enzymatic activity, inhibitory toxicity and signal transduction. Highly specific ...
Nucleotide Protein
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