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LOC115198314 kin of IRRE-like protein 1 [ Salmo trutta (river trout) ]

Gene ID: 115198314, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115198314
Gene description
kin of IRRE-like protein 1
See related
Ensembl:ENSSTUG00000038617
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115198314 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
15
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 8 NC_042964.1 (17198059..17237752, complement)

Chromosome 8 - NC_042964.1Genomic Context describing neighboring genes Neighboring gene high affinity immunoglobulin epsilon receptor subunit gamma-like Neighboring gene NADH:ubiquinone oxidoreductase core subunit S2 Neighboring gene transfer RNA arginine (anticodon UCU) Neighboring gene interleukin 13 receptor, alpha 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042964.1 Chromosome 8 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cell adhesion molecule binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cell-cell junction IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
kin of IRRE-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042964.1 Reference fSalTru1.1 Primary Assembly

    Range
    17198059..17237752 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029760202.1 → XP_029616062.1  kin of IRRE-like protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A674CWI4
    Related
    ENSSTUP00000088188.1, ENSSTUT00000093843.1
    Conserved Domains (3) summary
    cd05898
    Location:389 → 492
    Ig5_KIRREL3; Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)
    smart00409
    Location:231 → 302
    IG; Immunoglobulin
    cl11960
    Location:137 → 217
    Ig; Immunoglobulin domain

  2. XM_029760201.1 → XP_029616061.1  kin of IRRE-like protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A674CWI4
    Related
    ENSSTUP00000087991.1, ENSSTUT00000093628.1
Nucleotide Protein
Heading Accession and Version

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