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LOC115196165 heparan-sulfate 6-O-sulfotransferase 1-A-like [ Salmo trutta (river trout) ]

Gene ID: 115196165, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115196165
Gene description
heparan-sulfate 6-O-sulfotransferase 1-A-like
See related
Ensembl:ENSSTUG00000050637
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115196165 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
4
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 6 NC_042962.1 (50484189..50506093, complement)

Chromosome 6 - NC_042962.1Genomic Context describing neighboring genes Neighboring gene zinc finger protein 585A-like Neighboring gene UDP-glucose:glycoprotein glucosyltransferase 1-like Neighboring gene complement C1q-like protein 2 Neighboring gene otolith matrix protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042962.1 Chromosome 6 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables heparan sulfate 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in heparan sulfate proteoglycan biosynthetic process, enzymatic modification IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heparan-sulfate 6-O-sulfotransferase 1-A-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042962.1 Reference fSalTru1.1 Primary Assembly

    Range
    50484189..50506093 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029756786.1 → XP_029612646.1  heparan-sulfate 6-O-sulfotransferase 1-A-like

    UniProtKB/TrEMBL
    A0A674DG65, A0A674F2T1, A0A674F2T6
    Related
    ENSSTUP00000114894.1, ENSSTUT00000122935.1
    Conserved Domains (1) summary
    pfam03567
    Location:78 → 342
    Sulfotransfer_2; Sulfotransferase family
Nucleotide Protein
Heading Accession and Version

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