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LOC115196133 procollagen galactosyltransferase 1-like [ Salmo trutta (river trout) ]

Gene ID: 115196133, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115196133
Gene description
procollagen galactosyltransferase 1-like
See related
Ensembl:ENSSTUG00000005131
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115196133 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
13
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 1 NC_042957.1 (41954609..41990816, complement)

Chromosome 1 - NC_042957.1Genomic Context describing neighboring genes Neighboring gene LIM homeobox transcription factor 1-alpha-like Neighboring gene GEM-interacting protein-like Neighboring gene 6-phosphogluconolactonase-like Neighboring gene zinc finger protein 572-like Neighboring gene zinc finger protein 24-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042957.1 Chromosome 1 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables procollagen galactosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
procollagen galactosyltransferase 1-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042957.1 Reference fSalTru1.1 Primary Assembly

    Range
    41954609..41990816 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029756733.1 → XP_029612593.1  procollagen galactosyltransferase 1-like

    UniProtKB/TrEMBL
    A0A673WGU3, A0A673WRC5
    Related
    ENSSTUP00000011187.1, ENSSTUT00000011872.1
    Conserved Domains (2) summary
    cl01298
    Location:327 → 511
    Glyco_transf_25; Glycosyltransferase family 25 [lipooligosaccharide (LOS) biosynthesis protein] is a family of glycosyltransferases involved in LOS biosynthesis. The members include the beta(1,4) galactosyltransferases: Lgt2 of Moraxella catarrhalis, LgtB and LgtE of ...
    cl11394
    Location:40 → 87
    Glyco_tranf_GTA_type; Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold

RNA

  1. XR_003878804.1 RNA Sequence

Nucleotide Protein
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