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LOC115195519 interferon regulatory factor 4-like [ Salmo trutta (river trout) ]

Gene ID: 115195519, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115195519
Gene description
interferon regulatory factor 4-like
See related
Ensembl:ENSSTUG00000012480
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115195519 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
10
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 6 NC_042962.1 (15071797..15076996)

Chromosome 6 - NC_042962.1Genomic Context describing neighboring genes Neighboring gene carboxypeptidase A6-like Neighboring gene E3 ubiquitin-protein ligase RNF31-like Neighboring gene ER membrane protein complex subunit 9-like Neighboring gene alanine aminotransferase 2-like Neighboring gene protein phosphatase 1 regulatory subunit 16A-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042962.1 Chromosome 6 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune system process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
interferon regulatory factor 4-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042962.1 Reference fSalTru1.1 Primary Assembly

    Range
    15071797..15076996
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029755428.1 → XP_029611288.1  interferon regulatory factor 4-like isoform X2

    UniProtKB/TrEMBL
    A0A673Y335
    Conserved Domains (2) summary
    pfam00605
    Location:11 → 115
    IRF; Interferon regulatory factor transcription factor
    pfam10401
    Location:212 → 386
    IRF-3; Interferon-regulatory factor 3

  2. XM_029755427.1 → XP_029611287.1  interferon regulatory factor 4-like isoform X1

    UniProtKB/TrEMBL
    A0A673Y2W4, A0A673Y335
    Related
    ENSSTUP00000028865.1, ENSSTUT00000030212.1
Nucleotide Protein
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