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LOC115194534 pulmonary surfactant-associated protein D-like [ Salmo trutta (river trout) ]

Gene ID: 115194534, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115194534
Gene description
pulmonary surfactant-associated protein D-like
See related
Ensembl:ENSSTUG00000023600
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115194534 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
5
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 5 NC_042961.1 (54346452..54351530, complement)

Chromosome 5 - NC_042961.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115194533 Neighboring gene uncharacterized LOC115194532 Neighboring gene uncharacterized LOC115194976 Neighboring gene uncharacterized LOC115194535

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042961.1 Chromosome 5 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in multivesicular body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in rough endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pulmonary surfactant-associated protein D-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042961.1 Reference fSalTru1.1 Primary Assembly

    Range
    54346452..54351530 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029754287.1 → XP_029610147.1  pulmonary surfactant-associated protein D-like

    UniProtKB/TrEMBL
    A0A674A9M7
    Related
    ENSSTUP00000055617.1, ENSSTUT00000058182.1
    Conserved Domains (2) summary
    pfam01391
    Location:41 → 100
    Collagen; Collagen triple helix repeat (20 copies)
    cl02432
    Location:137 → 250
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
Nucleotide Protein
Heading Accession and Version

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