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LOC115194158 transcription factor p65-like [ Salmo trutta (river trout) ]

Gene ID: 115194158, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115194158
Gene description
transcription factor p65-like
See related
Ensembl:ENSSTUG00000047129
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115194158 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
12
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 5 NC_042961.1 (41393851..41402386, complement)

Chromosome 5 - NC_042961.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115194157 Neighboring gene transcription factor p65-like Neighboring gene serine/threonine-protein phosphatase PP1-beta catalytic subunit Neighboring gene uncharacterized LOC115194160 Neighboring gene equilibrative nucleoside transporter 2-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042961.1 Chromosome 5 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cellular response to stress IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in inflammatory response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in innate immune response IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in non-canonical NF-kappaB signal transduction IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to cytokine IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor p65-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042961.1 Reference fSalTru1.1 Primary Assembly

    Range
    41393851..41402386 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029753607.1 → XP_029609467.1  transcription factor p65-like isoform X1

    UniProtKB/TrEMBL
    A0A674EBQ5, A0A674ECK5
    Related
    ENSSTUP00000105738.1, ENSSTUT00000113362.1
    Conserved Domains (2) summary
    cd01177
    Location:191 → 287
    IPT_NFkappaB; IPT domain of the transcription factor NFkappaB and related transcription factors. NFkappaB is considered a central regulator of stress responses, activated by different stressful conditions, including physical stress, oxidative stress, and exposure to ...
    cl08275
    Location:17 → 184
    RHD-n; N-terminal sub-domain of the Rel homology domain (RHD)

  2. XM_029753608.1 → XP_029609468.1  transcription factor p65-like isoform X2

    UniProtKB/TrEMBL
    A0A674ECK5
    Related
    ENSSTUP00000105729.1, ENSSTUT00000113352.1
    Conserved Domains (2) summary
    cd01177
    Location:162 → 258
    IPT_NFkappaB; IPT domain of the transcription factor NFkappaB and related transcription factors. NFkappaB is considered a central regulator of stress responses, activated by different stressful conditions, including physical stress, oxidative stress, and exposure to ...
    cl08275
    Location:1 → 155
    RHD-n; N-terminal sub-domain of the Rel homology domain (RHD)
Nucleotide Protein
Heading Accession and Version

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