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LOC115194003 TGF-beta-activated kinase 1 and MAP3K7-binding protein 2-like [ Salmo trutta (river trout) ]

Gene ID: 115194003, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115194003
Gene description
TGF-beta-activated kinase 1 and MAP3K7-binding protein 2-like
See related
Ensembl:ENSSTUG00000035293
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115194003 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
8
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 1 NC_042957.1 (31209262..31279760, complement)

Chromosome 1 - NC_042957.1Genomic Context describing neighboring genes Neighboring gene probable ribonuclease ZC3H12D Neighboring gene peptidylprolyl isomerase (cyclophilin)-like 4 Neighboring gene cyclin-dependent kinase 19 Neighboring gene S-adenosylmethionine decarboxylase proenzyme-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042957.1 Chromosome 1 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables K63-linked polyubiquitin modification-dependent protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of protein kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TGF-beta-activated kinase 1 and MAP3K7-binding protein 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042957.1 Reference fSalTru1.1 Primary Assembly

    Range
    31209262..31279760 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029753236.1 → XP_029609096.1  TGF-beta-activated kinase 1 and MAP3K7-binding protein 2-like isoform X1

    UniProtKB/TrEMBL
    A0A674C972, A0A674C9Y0

  2. XM_029753262.1 → XP_029609122.1  TGF-beta-activated kinase 1 and MAP3K7-binding protein 2-like isoform X4

    UniProtKB/TrEMBL
    A0A674C9Y0

  3. XM_029753253.1 → XP_029609113.1  TGF-beta-activated kinase 1 and MAP3K7-binding protein 2-like isoform X3

    UniProtKB/TrEMBL
    A0A674C9Y0

  4. XM_029753245.1 → XP_029609105.1  TGF-beta-activated kinase 1 and MAP3K7-binding protein 2-like isoform X2

    UniProtKB/TrEMBL
    A0A674C9Y0

  5. XM_029753227.1 → XP_029609087.1  TGF-beta-activated kinase 1 and MAP3K7-binding protein 2-like isoform X1

    UniProtKB/TrEMBL
    A0A674C972, A0A674C9Y0
    Related
    ENSSTUP00000080029.1, ENSSTUT00000085185.1

  6. XM_029753308.1 → XP_029609168.1  TGF-beta-activated kinase 1 and MAP3K7-binding protein 2-like isoform X9

    UniProtKB/TrEMBL
    A0A674C9B3
    Related
    ENSSTUP00000080069.1, ENSSTUT00000085226.1
    Conserved Domains (5) summary
    smart00547
    Location:699 → 722
    ZnF_RBZ; Zinc finger domain
    cd14362
    Location:9 → 50
    CUE_TAB2_TAB3; CUE domain found in the N-terminal of TGF-beta-activated kinase 1 and MAP3K7-binding proteins TAB2, TAB3 and similar proteins
    TIGR04523
    Location:620 → 703
    Mplasa_alph_rch; helix-rich Mycoplasma protein
    sd00029
    Location:700 → 719
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    pfam09770
    Location:227 → 359
    PAT1; Topoisomerase II-associated protein PAT1

  7. XM_029753299.1 → XP_029609159.1  TGF-beta-activated kinase 1 and MAP3K7-binding protein 2-like isoform X8

    UniProtKB/TrEMBL
    A0A674C9Y0
    Conserved Domains (5) summary
    smart00547
    Location:707 → 730
    ZnF_RBZ; Zinc finger domain
    cd14362
    Location:9 → 50
    CUE_TAB2_TAB3; CUE domain found in the N-terminal of TGF-beta-activated kinase 1 and MAP3K7-binding proteins TAB2, TAB3 and similar proteins
    TIGR04523
    Location:620 → 684
    Mplasa_alph_rch; helix-rich Mycoplasma protein
    sd00029
    Location:708 → 727
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    pfam09770
    Location:227 → 359
    PAT1; Topoisomerase II-associated protein PAT1

  8. XM_029753291.1 → XP_029609151.1  TGF-beta-activated kinase 1 and MAP3K7-binding protein 2-like isoform X7

    UniProtKB/TrEMBL
    A0A674C9Y0

  9. XM_029753284.1 → XP_029609144.1  TGF-beta-activated kinase 1 and MAP3K7-binding protein 2-like isoform X6

    UniProtKB/TrEMBL
    A0A674C9Y0

  10. XM_029753273.1 → XP_029609133.1  TGF-beta-activated kinase 1 and MAP3K7-binding protein 2-like isoform X5

    UniProtKB/TrEMBL
    A0A674C9Y0
    Conserved Domains (5) summary
    smart00547
    Location:731 → 754
    ZnF_RBZ; Zinc finger domain
    cd14362
    Location:9 → 50
    CUE_TAB2_TAB3; CUE domain found in the N-terminal of TGF-beta-activated kinase 1 and MAP3K7-binding proteins TAB2, TAB3 and similar proteins
    TIGR04523
    Location:620 → 684
    Mplasa_alph_rch; helix-rich Mycoplasma protein
    sd00029
    Location:732 → 751
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    pfam09770
    Location:227 → 359
    PAT1; Topoisomerase II-associated protein PAT1
Nucleotide Protein
Heading Accession and Version

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