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LOC115193708 carbohydrate sulfotransferase 15-like [ Salmo trutta (river trout) ]

Gene ID: 115193708, updated on 21-Dec-2023

Summary

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Gene symbol
LOC115193708
Gene description
carbohydrate sulfotransferase 15-like
See related
Ensembl:ENSSTUG00000011915
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
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Genomic context

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See LOC115193708 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
10
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 5 NC_042961.1 (14556025..14609774, complement)

Chromosome 5 - NC_042961.1Genomic Context describing neighboring genes Neighboring gene homeobox protein HMX2-like Neighboring gene G-protein coupled receptor 26-like Neighboring gene NK1 transcription factor-related protein 2-like Neighboring gene uncharacterized LOC115193710

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_042961.1 Chromosome 5 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N-acetylgalactosamine 4-sulfate 6-O-sulfotransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hexose biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
carbohydrate sulfotransferase 15-like

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042961.1 Reference fSalTru1.1 Primary Assembly

    Range
    14556025..14609774 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029752642.1 → XP_029608502.1  carbohydrate sulfotransferase 15-like isoform X3

  2. XM_029752640.1 → XP_029608500.1  carbohydrate sulfotransferase 15-like isoform X1

    Conserved Domains (1) summary
    pfam13469
    Location:202 → 442
    Sulfotransfer_3; Sulfotransferase family

  3. XM_029752638.1 → XP_029608498.1  carbohydrate sulfotransferase 15-like isoform X1

  4. XM_029752639.1 → XP_029608499.1  carbohydrate sulfotransferase 15-like isoform X1

  5. XM_029752641.1 → XP_029608501.1  carbohydrate sulfotransferase 15-like isoform X2

    UniProtKB/TrEMBL
    A0A673XYV1
    Related
    ENSSTUP00000027426.1, ENSSTUT00000028714.1
Nucleotide Protein
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