U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC115192663 gastrula zinc finger protein XlCGF57.1-like [ Salmo trutta (river trout) ]

Gene ID: 115192663, updated on 21-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC115192663
Gene description
gastrula zinc finger protein XlCGF57.1-like
See related
Ensembl:ENSSTUG00000008091
Gene type
protein coding
RefSeq status
MODEL
Organism
Salmo trutta
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Salmo
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC115192663 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
2
Annotation release Status Assembly Chr Location
100 current fSalTru1.1 (GCF_901001165.1) 4 NC_042960.1 (56138240..56148145, complement)

Chromosome 4 - NC_042960.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC115192662 Neighboring gene zinc finger protein with KRAB and SCAN domains 7-like Neighboring gene zinc finger protein 79-like Neighboring gene zinc finger protein 629-like Neighboring gene zinc finger and SCAN domain-containing protein 21-like

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_042960.1 Chromosome 4 Reference fSalTru1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
gastrula zinc finger protein XlCGF57.1-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Salmo trutta Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fSalTru1.1 Primary Assembly

Genomic

  1. NC_042960.1 Reference fSalTru1.1 Primary Assembly

    Range
    56138240..56148145 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029751419.1 → XP_029607279.1  gastrula zinc finger protein XlCGF57.1-like

    UniProtKB/TrEMBL
    A0A673X182
    Related
    ENSSTUP00000017960.1, ENSSTUT00000018901.1
    Conserved Domains (6) summary
    PHA00733
    Location:258 → 305
    PHA00733; hypothetical protein
    COG5189
    Location:366 → 445
    SFP1; Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]
    sd00017
    Location:372 → 392
    ZF_C2H2; C2H2 Zn finger [structural motif]
    sd00019
    Location:289 → 309
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:342 → 364
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:440 → 465
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases